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What Leads To Signs Of Autoimmune Diseases And

Autoimmune diseases occur when the immune system mistakenly attacks the body’s own tissues. Learn what causes early symptoms, how triggers like infections, stress, and hormones contribute, and how to recognise and manage flares effectively.

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Written by Dr. Siri Nallapu

Reviewed by Dr. J T Hema Pratima MBBS

Last updated on 30th Oct, 2025

Autoimmune Diseases

Introduction

When your immune system works correctly, it defends against infections and helps you heal. In autoimmune diseases, however, that defence system gets confused and targets healthy tissues. The visible “signs” of autoimmune disease—fatigue, joint pain, skin rashes, digestive issues, thyroid changes, nerve symptoms—are the result of this mistaken attack and resulting inflammation.

What sets this in motion? Why do symptoms sometimes begin after a viral illness, a stressful period, pregnancy, or hormonal shifts? And why are women more commonly affected than men?
This guide explains the connections between genes, environment, hormones, the gut, and lifestyle factors that influence autoimmune symptoms. You’ll also learn how early signs are recognised, what tests doctors may recommend, and how to reduce risk and manage flares.

If symptoms persist beyond two weeks or disrupt daily activities, consider consulting a doctor online with Apollo 24|7 
for further evaluation and access to home sample collection for necessary tests. Understanding your triggers is the first step toward taking control.

Consult a Top General Practitioner for Personalised Advice

Dr. Mainak Baksi, General Practitioner

Dr. Mainak Baksi

General Practitioner

13 Years • MBBS , MD (MPH)

Howrah

Mainak Baksi Clinic, Howrah

recommendation

82%

(50+ Patients)

600

750

Dr. Rajib Ghose, General Physician/ Internal Medicine Specialist

Dr. Rajib Ghose

General Physician/ Internal Medicine Specialist

25 Years • MBBS

East Midnapore

VIVEKANANDA SEBA SADAN, East Midnapore

950

850

Autoimmunity: How Misfires Create Symptoms

Autoimmune diseases happen when the immune system mistakenly attacks the body’s own tissues.

Autoimmune diseases begin when immune cells fail to distinguish between “self” and “foreign”. Instead of attacking only bacteria or viruses, they target healthy proteins in the joints, thyroid, gut, nerves, or skin. This causes inflammation—
leading to pain, swelling, fatigue, and impaired function.

Different immune pathways produce different conditions:

  • Rheumatoid arthritis (RA): Immune cells attack joint lining → swelling, stiffness, especially in the hands and wrists.
  • Psoriasis: Rapid skin cell turnover → scaly plaques, itching.
  • Hashimoto’s thyroiditis: Thyroid damage → fatigue, cold intolerance, weight gain.
  • Lupus (SLE): Multi-organ involvement → rashes, joint pain, kidney problems.

Many people have autoantibodies for years before symptoms appear, which means early recognition is key.

Genetics and Epigenetics: Who Is Primed for Autoimmunity?

Genes increase susceptibility, but environmental triggers decide when symptoms start.

Certain immune-related genes increase risk. Autoimmune diseases often run in families—though relatives may develop different autoimmune conditions.

Epigenetics adds another layer: changes in how genes are switched on or off due to:

  • Stress
  • Infections
  • Smoking
  • Air pollutants
  • Diet

This helps explain why siblings with similar genes can have very different health outcomes.

Takeaway: Genetics may “load the gun”, but lifestyle and environment “pull the trigger”.

Environmental Triggers: Infections, Toxins, and Beyond

Certain exposures can spark or worsen symptoms in those with underlying risk.

Key triggers include:

  • Viral or bacterial infections

Sometimes, immune cells begin attacking healthy tissues after infection (molecular mimicry).

  • Smoking

Raises the risk and severity of conditions like RA.

  • Pollution and occupational chemical exposure

May increase autoimmune risk in sensitive individuals.

  • Some medications

Rarely cause reversible autoimmune-like reactions.

  • Ultraviolet (UV) light

Can trigger lupus flares—sun protection is essential.

The timing and intensity of exposures matter—for example, a high-stress infection period may trigger a flare when otherwise it wouldn’t.

The Gut–Immune Axis: Microbiome, Diet, and Intestinal Barriers

Gut health significantly influences immune balance and inflammatory responses.

Around 70% of the immune system sits along the gut lining. A balanced microbiome encourages immune tolerance; 
imbalance (dysbiosis) can promote inflammation.

A weakened gut barrier—often called “leaky gut”—may allow fragments from food or microbes to enter the 
bloodstream, stimulating immune activity.

Diet that supports immune balance:

  • More fibre-rich vegetables and fruit
  • Whole grains (if tolerated)
  • Fish, nuts, olive oil
  • Fermented foods (yoghurt, kefir)

Diet that may worsen flares:

  • Highly processed foods
  • Excess sugar and alcohol
  • Unsupervised extreme elimination diets

A registered dietitian can provide targeted nutritional strategies—Apollo24|7 can help you connect with one.

Hormones, Sex Differences, and Life Stages

Women face a higher risk due to hormonal and immune system interactions.

Autoimmune diseases affect women about three to four times more often than men. Hormonal changes influence 
symptom patterns:

  • Puberty: Some conditions first appear.
  • Pregnancy: Certain conditions improve, others worsen.
  • Postpartum: Sudden thyroid shifts can occur.
  • Menopause: Decreased oestrogen may worsen joint symptoms.

Tracking symptoms along hormonal cycles can help tailor treatment.

Lifestyle Drivers: Stress, Sleep, Weight, and Vitamin D

Balanced routines can reduce inflammation and flare intensity.

Major influences:

  • Chronic stress

Heightens inflammatory chemicals → increased fatigue and pain.

  • Poor sleep quality

Weakens immunity and worsens flares.

  • Excess weight

Fat tissue produces inflammatory molecules.

  • Low vitamin D

Common in autoimmune conditions; testing and supplements may help when advised by a clinician.

Apollo 24|7 offers convenient home blood tests such as cortisol, vitamin D, ESR, CRP, and thyroid screening.

Small, daily choices—like a brisk walk, a consistent bedtime, and sunlight exposure—can reduce flare risk long-term.

Recognising Early Signs and Getting Diagnosed

Symptoms can be scattered—tracking patterns leads to faster diagnosis.

Common early signs include:

  • Persistent fatigue
  • Morning stiffness (lasting >30 minutes)
  • Joint swelling or tenderness
  • Skin rashes or hair loss
  • Digestive changes
  • Thyroid-related mood or energy shifts
  • Numbness, tingling, or visual changes

Tests doctors may order:

  • Blood tests: ANA, ESR, CRP, thyroid antibodies, and others, depending on symptoms
  • Imaging: Ultrasound or MRI for joint inflammation
  • Endoscopy: If gut conditions are suspected

If symptoms continue beyond two weeks, consider an online consultation with Apollo24|7 for early evaluation and testing.

Flares: What Sparks Them—and How to Prevent Them

Flares are periods when symptoms intensify—triggers vary between people.

Common triggers:

  • Infection (even a mild cold)
  • Stress or sleep disruption
  • Medication changes
  • Sun exposure in photosensitive conditions
  • Alcohol or dietary triggers

Preventive strategies:

  • Keep up with scheduled medication
  • Plan rest during high-stress weeks
  • Maintain hydration and anti-inflammatory foods
  • Use sun protection outdoors

Creating a personalised flare plan with your clinician improves confidence and outcomes.

Myths vs Facts

Accurate information empowers better choices.

Myth

Fact

“Vaccines cause autoimmune diseases.”

Vaccines do not cause autoimmune diseases; they reduce infection-related flares.

“Detox diets cure autoimmunity.”

Extreme detoxes may worsen symptoms; organs already detox naturally.

“Negative blood tests rule out autoimmunity.”

Early disease can be seronegative; diagnosis evolves over time.

“There is one best diet for everyone.”

Diet triggers vary; guidance should be personalised.

Living Well with Autoimmunity: Daily Strategies

Managing symptoms is a blend of medical care and self-care.

Key components:

  • Strong care team: Primary doctor + specialist(s)
  • Medication adherence: Prevents irreversible organ damage
  • Movement: Strength, mobility, low-impact cardio
  • Diet: Anti-inflammatory choices, hydration
  • Mental health support: Stress management improves outcomes

Apollo 24|7 can help coordinate appointments, follow-up blood tests, and referrals.

Conclusion

Autoimmune symptoms form over time through a complex interplay of genetics, environment, hormones, infections, stress, gut health, and lifestyle. Inflammation is the common pathway, and your symptoms are signals—not guesses—about what your body needs.

Understanding how symptoms fluctuate empowers you to act earlier. Track patterns such as morning stiffness, rashes after sun exposure, or flares after stressful weeks. Share these details with your clinician; even small clues can guide better tests and treatments.

Managing autoimmunity is not about perfection—it’s about consistency. Support your body with regular sleep, nutrient-rich foods, movement you enjoy, and stress-reducing habits. Protect yourself from avoidable triggers like smoking and excess UV. And remain engaged with medical care, especially when symptoms change.

If signs persist beyond two weeks, affect multiple body systems, or interfere with daily functioning, book a consultation with a doctor online through Apollo 24|7. They can order essential tests—such as ANA, ESR/CRP, vitamin D, or thyroid panels—via convenient home collection, and connect you with specialists.

With informed choices, early intervention, and personalised care, people with autoimmune conditions can manage flares, protect organs, and live full, active lives.

Consult a Top General Practitioner for Personalised Advice

Dr. Mainak Baksi, General Practitioner

Dr. Mainak Baksi

General Practitioner

13 Years • MBBS , MD (MPH)

Howrah

Mainak Baksi Clinic, Howrah

recommendation

82%

(50+ Patients)

600

750

Dr. Rajib Ghose, General Physician/ Internal Medicine Specialist

Dr. Rajib Ghose

General Physician/ Internal Medicine Specialist

25 Years • MBBS

East Midnapore

VIVEKANANDA SEBA SADAN, East Midnapore

950

850

Consult a Top General Practitioner for Personalised Advice

Dr. Mainak Baksi, General Practitioner

Dr. Mainak Baksi

General Practitioner

13 Years • MBBS , MD (MPH)

Howrah

Mainak Baksi Clinic, Howrah

recommendation

82%

(50+ Patients)

600

750

Dr. Rajib Ghose, General Physician/ Internal Medicine Specialist

Dr. Rajib Ghose

General Physician/ Internal Medicine Specialist

25 Years • MBBS

East Midnapore

VIVEKANANDA SEBA SADAN, East Midnapore

950

850

Dr. Sougata Kumar, General Practitioner

Dr. Sougata Kumar

General Practitioner

8 Years • MBBS

East Midnapore

VIVEKANANDA SEBA SADAN, East Midnapore

750

Dr. Siddharth Verma, General Practitioner

Dr. Siddharth Verma

General Practitioner

13 Years • MBBS

Delhi

Durga Health Care, Delhi

1250

700

Dr. Sasikamalam, General Practitioner

Dr. Sasikamalam

General Practitioner

1 Years • MBBS

COIMBATORE

Apollo Sugar Clinic Coimbatore, COIMBATORE

300

300

Consult a Top General Practitioner for Personalised Advice

Dr. Mainak Baksi, General Practitioner

Dr. Mainak Baksi

General Practitioner

13 Years • MBBS , MD (MPH)

Howrah

Mainak Baksi Clinic, Howrah

recommendation

82%

(50+ Patients)

600

750

Dr. Rajib Ghose, General Physician/ Internal Medicine Specialist

Dr. Rajib Ghose

General Physician/ Internal Medicine Specialist

25 Years • MBBS

East Midnapore

VIVEKANANDA SEBA SADAN, East Midnapore

950

850

Dr. Sougata Kumar, General Practitioner

Dr. Sougata Kumar

General Practitioner

8 Years • MBBS

East Midnapore

VIVEKANANDA SEBA SADAN, East Midnapore

750

Dr. Siddharth Verma, General Practitioner

Dr. Siddharth Verma

General Practitioner

13 Years • MBBS

Delhi

Durga Health Care, Delhi

1250

700

Dr. Sasikamalam, General Practitioner

Dr. Sasikamalam

General Practitioner

1 Years • MBBS

COIMBATORE

Apollo Sugar Clinic Coimbatore, COIMBATORE

300

300

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Frequently Asked Questions

1) What are the first signs of autoimmune disease in females?

Persistent fatigue, morning stiffness, rashes (especially with sun), hair thinning, or thyroid-related changes. Track symptoms and consult a clinician if they persist beyond two weeks.

2) What triggers autoimmune flare-ups?

Infections, stress, sleep loss, medication changes, alcohol, and sometimes diet changes.

3) Which tests diagnose autoimmune disease?

Tests may include ANA, ESR/CRP, thyroid antibodies, anti-CCP (RA), anti-dsDNA (lupus), and others, depending on symptoms.

4) Does vitamin D deficiency affect autoimmunity?

Low vitamin D is linked to greater inflammation. Your doctor may recommend supplements after testing.

5) How do I tell the difference between a flare and an infection?

Flares often follow familiar patterns without a high fever. New or severe fevers, cough with phlegm, or localised pain suggest infection—seek medical advice.